Blog · 27 October 2026 · 8 min read

How US Healthcare WorksPart 4 of 18
  1. The map: members, patients, providers and payers
  2. Public and private coverage: Medicare, Medicaid, employer and marketplace plans
  3. How a health plan works: premiums, cost sharing and plan types
  4. The code systems: ICD-10, CPT, HCPCS, DRGs and more
  5. Coverage policy: NCDs, LCDs and medical policy
  6. Eligibility and enrollment
  7. Network management: contracting, credentialing and provider data
  8. Benefit digitization
  9. Utilization management
  10. Prior authorization
  11. Care management
  12. From visit to claim
  13. Claim adjudication
  14. The claim SOP: the checks an examiner works through, step by step, to a final decision
  15. Payment integrity
  16. How providers get paid
  17. Pharmacy and PBMs
  18. The data and rules underneath, and where AI fits

How US Healthcare Works, Part 4: The Code Systems

A payer processes millions of claims a day, and it can't read a doctor's notes for each one. So every visit is translated into codes: one set saying what was wrong with the patient, another saying what was done, and a few more saying where, by whom and with what. Part 3 showed the arithmetic a plan runs on a claim. This part covers the vocabulary the claim is written in. Almost every rule later in the series, from prior authorization to payment, is a rule about these codes.

1. The two questions every claim answers

QuestionCode systemWho maintains it
Why was the patient seen? (diagnosis)ICD-10-CMCDC's National Center for Health Statistics, with CMS
What was done? (outpatient and physician services)CPT and HCPCS Level IIAmerican Medical Association (CPT); CMS (HCPCS II)
What was done? (inpatient hospital procedures)ICD-10-PCSCMS
How is a hospital stay grouped for payment?MS-DRGCMS

The diagnosis justifies the procedure. A claim for a knee MRI with a diagnosis code for an ear infection will be denied, because nothing about an ear infection makes a knee MRI necessary. Checking that the two fit together is one of the first edits a payer runs.

2. ICD-10-CM: diagnoses

ICD-10-CM is the US version of the World Health Organization's International Classification of Diseases. The US moved to it from ICD-9 on 1 October 2015. Codes are three to seven characters: a letter, then digits, a decimal point after the third character, and more characters adding detail.

Take Maria's son's ear infection from part 3:

H66.91    Otitis media, unspecified, right ear
H66       Suppurative and unspecified otitis media   (category)
H66.9     Otitis media, unspecified                  (subcategory)
H66.91    ... right ear                              (laterality)

The detail matters for payment. Many codes exist in versions for the left side, right side, both sides and unspecified, and some payers deny or question claims that use an "unspecified" code when the record shows the side.

Some codes need a seventh character. Injuries use it to say whether this is the initial encounter (A), a follow-up (D) or a late effect (S), so a fracture treated today and the same fracture checked in six weeks carry different codes.

The code set is updated every year, effective 1 October, at the start of the federal fiscal year. Codes that get added or deleted mid-stream are a common cause of rejected claims in early October.

3. CPT: procedures and services

Current Procedural Terminology (CPT) codes describe what a physician or other professional did. The AMA owns CPT and licenses it, and updates it every year, effective 1 January. There are three categories:

CategoryFormatUsed for
IFive digitsMost procedures and services; these drive payment
IIFour digits plus FOptional quality-measure tracking, such as "blood pressure recorded"
IIIFour digits plus TEmerging technology, tracked before it gets a Category I code

The family's year from part 3, in CPT:

ServiceCPT
Son's office visit, established patient, low complexity99213
Maria's knee MRI without contrast73721
Maria's knee arthroscopy with meniscectomy29881
Husband's laparoscopic appendectomy44970

The office visit codes, 99202 to 99215, are called evaluation and management (E/M) codes. Since 2021 the level is chosen by the complexity of medical decision-making or by the total time spent, not by counting bullet points in the exam. Choosing a higher level than the record supports is called upcoding, and payers look for patterns of it (part 15).

4. HCPCS Level II: everything CPT doesn't cover

The Healthcare Common Procedure Coding System has two levels. Level I is CPT. Level II, maintained by CMS, is a letter followed by four digits and covers supplies, equipment, ambulance rides, some drugs and services CPT doesn't describe:

CodeMeaning
E0110Crutches, forearm, with tips and handgrips
A0427Ambulance service, advanced life support, emergency
J-codes, e.g. J0696Ceftriaxone sodium injection, per 250 mg (drugs given in a clinic)

J-codes matter for expensive drugs given in a clinic or infusion centre. The drug is billed per unit of the code, so a dose of 1 gram of ceftriaxone is four units of J0696. Unit errors are a classic source of overpayment.

5. Modifiers: two characters that change the meaning

A modifier is a two-character code attached to a procedure code to give extra information without inventing a new code.

ModifierMeaningWhy it matters
RT, LTRight side, left sideTwo knee procedures on different knees are both payable
25Significant, separately identifiable E/M service on the same day as a procedureWithout it, the office visit is bundled into the procedure and not paid
59Distinct procedural serviceOverrides a bundling edit when two procedures really were separate
26, TCProfessional component, technical componentSplits an imaging study between the radiologist who read it and the facility that ran the machine
50Bilateral procedureChanges the payment amount

Modifiers 25 and 59 are among the most audited in the industry, because they allow payments that bundling edits would otherwise block. The bundling edits themselves, such as Medicare's National Correct Coding Initiative (NCCI) pairs, come up again in part 13.

6. ICD-10-PCS and DRGs: inpatient hospital stays

For an inpatient stay, the hospital codes the procedures in ICD-10-PCS, a separate seven-character system where every character has a meaning: body system, operation, body part, approach, device and so on. The physician still bills the surgeon's work in CPT. So the same appendectomy is CPT 44970 on the surgeon's claim and an ICD-10-PCS code on the hospital's.

Medicare doesn't pay hospitals per procedure for inpatient stays. It pays a fixed amount per stay, based on the Medicare Severity Diagnosis Related Group (MS-DRG) the stay falls into. A grouper program reads the principal diagnosis, secondary diagnoses, procedures, age and discharge status, and assigns one DRG. Each DRG has a weight, and the payment is roughly the weight times the hospital's base rate.

Secondary diagnoses matter a lot here. A stay with a major complication or comorbidity (MCC) or a complication or comorbidity (CC) groups into a higher-paying DRG than the same procedure without one. For appendectomy, MS-DRGs 341, 342 and 343 are the same operation with an MCC, with a CC, and with neither. That's why hospitals employ coders and clinical documentation specialists, and why payers audit DRG assignments (part 15). Many commercial payers and Medicaid programs pay hospitals by DRG too, sometimes using their own grouper versions.

Hospital outpatient care has its own grouping for Medicare, Ambulatory Payment Classifications (APCs). Part 16 covers these payment methods.

7. The rest of the vocabulary

Code or identifierWhat it isExample
NPINational Provider Identifier: a 10-digit number for every provider, individual or organizationIssued through CMS's NPPES registry
Taxonomy codeThe provider's specialty208000000X is paediatrics
Place of serviceTwo digits for where professional care happened11 office, 21 inpatient hospital, 23 emergency room, 02 and 10 telehealth
Revenue codeFour digits on a hospital claim for the department or type of charge0450 emergency room, 0360 operating room
Type of billThree or four characters on a hospital claim for the kind of facility and claim0111 inpatient hospital, admit through discharge
NDCNational Drug Code: the specific drug, strength and packageUsed on pharmacy claims and alongside J-codes
CARC and RARCClaim Adjustment Reason Codes and Remittance Advice Remark Codes: why a payment differs from the chargeCARC 45: charge exceeds the fee schedule; CARC 1: deductible

CARCs come with a group code that says who is responsible for the difference: CO (contractual obligation, the provider writes it off), PR (patient responsibility, the member owes it) or OA (other adjustment). So "PR-1" on a remittance means the member owes this amount toward the deductible, and "CO-45" means the provider charged more than its contract allows and must write off the excess.

8. Two claim forms

Professional services (a doctor, a lab) and institutional services (a hospital, a nursing facility) are billed differently.

ProfessionalInstitutional
Paper formCMS-1500UB-04
Electronic transactionX12 837PX12 837I
Procedures coded inCPT and HCPCS, with modifiersRevenue codes, plus CPT/HCPCS for outpatient and ICD-10-PCS for inpatient
Typical payment basisFee schedule per serviceDRG per stay, APC per outpatient service, or per diem

Almost all claims are electronic now. Part 12 follows one from the provider's system to the payer.

9. Limits of codes

  • Codes lose detail. A code says a knee MRI happened; it doesn't say why the doctor thought it was needed. That gap is why payers sometimes ask for the medical record (parts 9 and 15).
  • Codes lag medicine. New procedures wait years for a Category I CPT code, and payers handle them case by case meanwhile.
  • Coding shapes payment, so payment shapes coding. Because DRGs and E/M levels pay more for more documented complexity, the incentive is to document and code more, and payers spend heavily on checking it.
  • Licensing. CPT is copyrighted by the AMA, and software that uses it needs a licence, unlike ICD-10 and HCPCS Level II, which are public.

Remember

TermMeaning
ICD-10-CMDiagnosis codes: why the patient was seen; updated each 1 October
CPTProcedure codes for professional services, owned by the AMA; updated each 1 January
HCPCS Level IICMS codes for supplies, equipment, ambulance and clinic-given drugs
ModifierTwo characters that change a procedure code's meaning, such as 25, 59, RT
ICD-10-PCSInpatient hospital procedure codes
MS-DRGMedicare's group for an inpatient stay, which sets the payment
NPIThe 10-digit identifier for every provider
CARC with CO / PRWhy a payment differs, and whether the provider or member owes the difference

Next, in part 5: coverage policy, how Medicare's national and local coverage decisions and each insurer's medical policies decide which coded services a plan will pay for at all.

Sources

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